Seehofer's master plan for migration was due to be revealed weeks ago, but the row between his party, the Christian Social Union (CSU), and Merkel's Christian Democrats (CDU) over Germany's immigration policy postponed it.
The migration master plan stipulates that all asylum seekers have to undergo a special procedure so as to determine whether they have already registered in other EU countries, whether their application was banned and whether they have a criminal record.
Asylum applications will be processed in special "anchor" centers. According to Seehofer, "Anker" (the German word for "anchor") is also an acronym for the sequence of words "Ankunft, Entscheidung, Rückführung," which means "arrival, decision, repatriation."
Seehofer's proposal triggered resistance from Greece and Italy, which often serve as entry points for migrants heading for the bloc from Africa across the Mediterranean. Rome has repeatedly urged other EU member states to do more to accommodate asylum seekers.
The migration dispute, which emerged between the two sister parties, the CDU and the CSU, has threatened not only to destroy Germany's ruling coalition, but to undermine the stability of the whole European Union. However, both parties, after tense negotiations, managed to conclude the deal and agreed to tighten border controls.
Since 2015, Europe has been facing its worst migration crisis since World War II, triggered by a number of armed conflicts and economic hardships in Africa and the Middle East. The EU has been struggling to accommodate hundreds of thousands of refugees fleeing war zones, while the measure to distribute the immigration burden among all member states has not been met with enthusiasm by many EU nations.